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Albarede F, Telouk P, Balter V, Bondanese VP, Albalat E, Oger P, Bonaventura P, Miossec P, Fujii T (2016), Medical applications of Cu, Zn, and S isotope effects, Metallomics, vol. 8 pp.1056-1070 , doi: 10.1039/c5mt00316d.

Arnaud O, Meyer S, Vallin E, Beslon G, Gandrillon O (2016), Erratum to : Temperature-induced variation in gene expression burst size in metazoan cells, BMC Mol Biol, vol. 17 pp.2 , doi: 10.1186/s12867-015-0054-4.

Attaiech L, Boughammoura A, Brochier-Armanet C, Allatif O, Peillard-Fiorente F, Edwards RA, Omar AR, MacMillan AM, Glover M, Charpentier X (2016), Silencing of natural transformation by an RNA chaperone and a multitarget small RNA, Proc Natl Acad Sci U S A, pp.201601626 , doi: 10.1073/pnas.1601626113.

Baude J, Vial L, Villard C, Campillo T, Lavire C, Nesme X, Hommais F (2016), Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum, Appl Environ Microbiol, vol. 82 pp.3515-24 , doi: 10.1128/AEM.00419-16.

Benterki MS, Ayachi A, Bennoune O, Regoudis E, Pelandakis M (2016), Meningoencephalitis due to the amoeboflagellate Naegleria fowleri in ruminants in Algeria, Parasite, vol. 23 pp.11 , doi: 10.1051/parasite/2016011.

Bondanese VP, Lamboux A, Simon M, Lafont JE, Albalat E, Pichat S, Vanacker JM, Telouk P, Balter V, Oger P, Albarede F (2016), Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner, Metallomics, , doi: 10.1039/c6mt00102e.

Bouyioukos C, Reverchon S, Kepes F (2016), From multiple pathogenicity islands to a unique organized pathogenicity archipelago, Sci Rep, vol. 6 pp.27978 , doi: 10.1038/srep27978.

Brunel R, Charpentier X (2016), Trans-translation is essential in the human pathogen Legionella pneumophila, Sci Rep, vol. 6 pp.37935 , doi: 10.1038/srep37935.

Brutesco C, Preveral S, Escoffier C, Descamps EC, Prudent E, Cayron J, Dumas L, Ricquebourg M, Adryanczyk-Perrier G, de Groot A, Garcia D, Rodrigue A, Pignol D, Ginet N (2016), Bacterial host and reporter gene optimization for genetically encoded whole cell biosensors, Environ Sci Pollut Res Int, , doi: 10.1007/s11356-016-6952-2.

Callac N, Oger P, Lesongeur F, Rattray JE, Vannier P, Michoud G, Beauverger M, Gayet N, Rouxel O, Jebbar M, Godfroy A (2016), Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent, Int J Syst Evol Microbiol, vol. 66 pp.3142-9 , doi: 10.1099/ijsem.0.001160.

Cario A, Jebbar M, Thiel A, Kervarec N, Oger PM (2016), Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus, Sci Rep, vol. 6 pp.29483 , doi: 10.1038/srep29483.

Coupat-Goutaland B, Regoudis E, Besseyrias M, Mularoni A, Binet M, Herbelin P, Pelandakis M (2016), Population Structure in Naegleria fowleri as Revealed by Microsatellite Markers, PLoS One, vol. 11 pp.e0152434 , doi: 10.1371/journal.pone.0152434.

Dalmasso C, Oger P, Courtine D, Georges M, Takai K, Maignien L, Alain K (2016), Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures, Genome Announc, vol. 4 , doi: 10.1128/genomeA.00610-16.

Dalmasso C, Oger P, Selva G, Courtine D, L'Haridon S, Garlaschelli A, Roussel E, Miyazaki J, Reveillaud J, Jebbar M, Takai K, Maignien L, Alain K (2016), Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise, Syst Appl Microbiol, vol. 39 pp.440-444 , doi: 10.1016/j.syapm.2016.08.003.

Dalmasso C, Oger P, Courtine D, Georges M, Takai K, Maignien L, Alain K (2016), Erratum for Dalmasso et al., Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus piezophilus CDGS T , Able To Grow under Extreme Hydrostatic Pressures, Genome Announcements, vol. 4 pp.e01018-16 , doi: 10.1128/genomeA.01018-16.

Descamps ECT, Meunier D, Brutesco C, Preveral S, Franche N, Bazin I, Miclot B, Larosa P, Escoffier C, Fantino JR, Garcia D, Ansaldi M, Rodrigue A, Pignol D, Cholat P, Ginet N (2017), Semi-autonomous inline water analyzer : design of a common light detector for bacterial, phage, and immunological biosensors, Environmental Science and Pollution Research, vol. 24 pp.66-72 , doi: 10.1007/s11356-016-8010-5.

Duprey A, Nasser W, Leonard S, Brochier-Armanet C, Reverchon S (2016), Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya, FEBS J, , doi: 10.1111/febs.13921.

Duprey A, Muskhelishvili G, Reverchon S, Nasser W (2016), Temporal control of Dickeya dadantii main virulence gene expression by growth phase-dependent alteration of regulatory nucleoprotein complexes, Biochim Biophys Acta, vol. 1859 pp.1470-1480 , doi: 10.1016/j.bbagrm.2016.08.001.

Eudes A, Zhao N, Sathitsuksanoh N, Baidoo EE, Lao J, Wang G, Yogiswara S, Lee TS, Singh S, Mortimer JC, Keasling JD, Simmons BA, Loque D (2016), Expression of S-adenosylmethionine Hydrolase in Tissues Synthesizing Secondary Cell Walls Alters Specific Methylated Cell Wall Fractions and Improves Biomass Digestibility, Front Bioeng Biotechnol, vol. 4 pp.58 , doi: 10.3389/fbioe.2016.00058.

Eudes A, Mouille M, Robinson DS, Benites VT, Wang G, Roux L, Tsai YL, Baidoo EEK, Chiu TY, Heazlewood JL, Scheller HV, Mukhopadhyay A, Keasling JD, Deutsch S, Loque D (2016), Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast, Microbial Cell Factories, vol. 15 , doi: 10.1186/s12934-016-0593-5.

Expert D, Patrit O, Shevchik VE, Perino C, Boucher V, Christophe C, Wenes E, Fagard M (2016), Dickeya dadantii pectic enzymes necessary for virulence are also responsible for activation of the Arabidopsis thaliana innate immune system, Mol Plant Pathol, , doi: 10.1111/mpp.12522.

Gault M, Effantin G, Rodrigue A (2016), Ni exposure impacts the pool of free Fe and modifies DNA supercoiling via metal-induced oxidative stress in Escherichia coli K-12, Free Radic Biol Med, , doi: 10.1016/j.freeradbiomed.2016.06.030.

Gault M, Rodrigue A (2016), Data set for transcriptome analysis of Escherichia coli exposed to nickel, Environ Sci Pollut Res Int, vol. 9 pp.314-7 , doi: 10.1007/s11356-016-8010-5.

Giannakis S, Ruales-Lonfat C, Rtimi S, Thabet S, Cotton P, Pulgarin C (2016), Castles fall from inside : Evidence for dominant internal photo-catalytic mechanisms during treatment of Saccharomyces cerevisiae by photo-Fenton at near-neutral pH, Applied Catalysis B: Environmental, vol. 185 pp.150-162 , doi: 10.1016/j.apcatb.2015.12.016.

Goncalves IR, Brouillet S, Soulie MC, Gribaldo S, Sirven C, Charron N, Boccara M, Choquer M (2016), Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi, BMC Evol Biol, vol. 16 pp.252 , doi: 10.1186/s12862-016-0815-9.

Guschinskaya N, Brunel R, Tourte M, Lipscomb GL, Adams MW, Oger P, Charpentier X (2016), Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation, Sci Rep, vol. 6 pp.36711 , doi: 10.1038/srep36711.

Jiang X, Zghidi-Abouzid O, Oger-Desfeux C, Hommais F, Greliche N, Muskhelishvili G, Nasser W, Reverchon S (2016), Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection, Environ Microbiol, , doi: 10.1111/1462-2920.13267.

Karaki L, Da Silva P, Rizk F, Chouabe C, Chantret N, Eyraud V, Gressent F, Sivignon C, Rahioui I, Kahn D, Brochier-Armanet C, Rahbe Y, Royer C (2016), Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula, BMC Plant Biol, vol. 16 pp.63 , doi: 10.1186/s12870-016-0745-0.

Leonard S, Hommais F, Nasser W, Reverchon S (2016), Plant-phytopathogen interactions : Bacterial responses to environmental and plant stimuli, Environ Microbiol, , doi: 10.1111/1462-2920.13611.

Li X, Grand L, Pouleriguen T, Queneau Y, da Silva P, Rahbe Y, Poessel JL, Moebs-Sanchez S (2016), Synthesis of new dicinnamoyl 4-deoxy quinic acid and methyl ester derivatives and evaluation of the toxicity against the pea aphid Acyrthosiphon pisum, Org Biomol Chem, vol. 14 pp.2487-97 , doi: 10.1039/c5ob02483h.

Martinez N, Michoud G, Cario A, Ollivier J, Franzetti B, Jebbar M, Oger P, Peters J (2016), High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes, Sci Rep, vol. 6 pp.32816 , doi: 10.1038/srep32816.

Nigatu D, Henkel W, Sobetzko P, Muskhelishvili G (2016), Relationship between digital information and thermodynamic stability in bacterial genomes, EURASIP J Bioinform Syst Biol, vol. 2016 pp.4 , doi: 10.1186/s13637-016-0037-x.

Oger P, Sokolova TG, Kozhevnikova DA, Taranov EA, Vannier P, Lee HS, Kwon KK, Kang SG, Lee JH, Bonch-Osmolovskaya EA, Lebedinsky AV (2016), Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate, Genome Announc, vol. 4 , doi: 10.1128/genomeA.01534-15.

Ouattara HG, Reverchon S, Niamke SL, Nasser W (2017), Regulation of the synthesis of pulp degrading enzymes in Bacillus isolated from cocoa fermentation, Food Microbiology, vol. 63 pp.255-262 , doi: 10.1016/

Pandin C, Caroff M, Condemine G (2016), Antimicrobial Peptide Resistance Genes in the Plant Pathogen Dickeya dadantii, Appl Environ Microbiol, vol. 82 pp.6423-6430 , doi: 10.1128/AEM.01757-16.

Regoudis E, Pelandakis M (2016), Detection of the free living amoeba Naegleria fowleri by using conventional and real-time PCR based on a single copy DNA sequence, Exp Parasitol, vol. 161 pp.35-9 , doi: 10.1016/j.exppara.2015.12.007.

Reverchon S, Muskhelisvili G, Nasser W (2016), Virulence Program of a Bacterial Plant Pathogen : The Dickeya Model, Prog Mol Biol Transl Sci, vol. 142 pp.51-92 , doi: 10.1016/bs.pmbts.2016.05.005.

Samagaci L, Ouattara H, Niamke S, Lemaire M (2016), Pichia kudrazevii and Candida nitrativorans are the most well-adapted and relevant yeast species fermenting cocoa in Agneby-Tiassa, a local Ivorian cocoa producing region, Food Research International, vol. 89 pp.773-780 , doi: 10.1016/j.foodres.2016.10.007.

Shih PM, Liang Y, Loque D (2016), Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops, Plant J, , doi: 10.1111/tpj.13176.

Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loque D (2016), A robust gene-stacking method utilizing yeast assembly for plant synthetic biology, Nat Commun, vol. 7 pp.13215 , doi: 10.1038/ncomms13215.

Six C, Aboukais S, Giron S, D'Oliveira JC, Peloux-Petiot F, Franke F, Terrien H, Dassonville F, Deniau J, Ambert-Balay K, Chesnot T, Ruimy R, Pelandakis M, Basset P, Munoz Rivero M, Malfait P (2016), Outbreak of diarrhoeal illness in participants in an obstacle adventure race, Alpes-Maritimes, France, June 2015, Euro Surveill, vol. 21 , doi: 10.2807/1560-7917.ES.2016.21.23.30253.

Uroz S, Oger P, Tisserand E, Cebron A, Turpault MP, Buee M, De Boer W, Leveau JH, Frey-Klett P (2016), Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities, Sci Rep, vol. 6 pp.27756 , doi: 10.1038/srep27756.

Vincent D, Plummer KM, Solomon PS, Lebrun MH, Job D, Rafiqi M (2016), Editorial : How Can Secretomics Help Unravel the Secrets of Plant-Microbe Interactions ?, Front Plant Sci, vol. 7 pp.1777 , doi: 10.3389/fpls.2016.01777.

Zghidi-Abouzid O, Herault E, Rimsky S, Reverchon S, Nasser W, Buckle M (2016), Regulation of pel genes, major virulence factors in the plant pathogen bacterium Dickeya dadantii, is mediated by cooperative binding of the nucleoid-associated protein H-NS, Res Microbiol, vol. 167 pp.247-53 , doi: 10.1016/j.resmic.2016.02.001.

Hugouvieux-Cotte-Pattat N (2016), Metabolism and Virulence Strategies in Dickeya-Host Interactions, Progress in Molecular Biology and Translational Science, vol. 142 pp.93-129 , doi: 10.1016/bs.pmbts.2016.05.006.