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Scientific production

Brutesco C, Preveral S, Escoffier C, Descamps EC, Prudent E, Cayron J, Dumas L, Ricquebourg M, Adryanczyk-Perrier G, de Groot A, Garcia D, Rodrigue A, Pignol D, Ginet N (2016), Bacterial host and reporter gene optimization for genetically encoded whole cell biosensors, Environ Sci Pollut Res Int, , doi: 10.1007/s11356-016-6952-2.

Descamps ECT, Meunier D, Brutesco C, Preveral S, Franche N, Bazin I, Miclot B, Larosa P, Escoffier C, Fantino JR, Garcia D, Ansaldi M, Rodrigue A, Pignol D, Cholat P, Ginet N (2017), Semi-autonomous inline water analyzer: design of a common light detector for bacterial, phage, and immunological biosensors, Environmental Science and Pollution Research, vol. 24 pp.66-72 , doi: 10.1007/s11356-016-8010-5.

Eudes A, Zhao N, Sathitsuksanoh N, Baidoo EE, Lao J, Wang G, Yogiswara S, Lee TS, Singh S, Mortimer JC, Keasling JD, Simmons BA, Loque D (2016), Expression of S-adenosylmethionine Hydrolase in Tissues Synthesizing Secondary Cell Walls Alters Specific Methylated Cell Wall Fractions and Improves Biomass Digestibility, Front Bioeng Biotechnol, vol. 4 pp.58 , doi: 10.3389/fbioe.2016.00058.

Eudes A, Mouille M, Robinson DS, Benites VT, Wang G, Roux L, Tsai YL, Baidoo EEK, Chiu TY, Heazlewood JL, Scheller HV, Mukhopadhyay A, Keasling JD, Deutsch S, Loque D (2016), Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast, Microbial Cell Factories, vol. 15 , doi: 10.1186/s12934-016-0593-5.

Expert D, Patrit O, Shevchik VE, Perino C, Boucher V, Christophe C, Wenes E, Fagard M (2016), Dickeya dadantii pectic enzymes necessary for virulence are also responsible for activation of the Arabidopsis thaliana innate immune system, Mol Plant Pathol, , doi: 10.1111/mpp.12522.

Gault M, Effantin G, Rodrigue A (2016), Ni exposure impacts the pool of free Fe and modifies DNA supercoiling via metal-induced oxidative stress in Escherichia coli K-12, Free Radic Biol Med, , doi: 10.1016/j.freeradbiomed.2016.06.030.

Gault M, Rodrigue A (2016), Data set for transcriptome analysis of Escherichia coli exposed to nickel, Environ Sci Pollut Res Int, vol. 9 pp.314-7 , doi: 10.1007/s11356-016-8010-5.

Guschinskaya N, Brunel R, Tourte M, Lipscomb GL, Adams MW, Oger P, Charpentier X (2016), Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation, Sci Rep, vol. 6 pp.36711 , doi: 10.1038/srep36711.

Karaki L, Da Silva P, Rizk F, Chouabe C, Chantret N, Eyraud V, Gressent F, Sivignon C, Rahioui I, Kahn D, Brochier-Armanet C, Rahbe Y, Royer C (2016), Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula, BMC Plant Biol, vol. 16 pp.63 , doi: 10.1186/s12870-016-0745-0.

Li X, Grand L, Pouleriguen T, Queneau Y, da Silva P, Rahbe Y, Poessel JL, Moebs-Sanchez S (2016), Synthesis of new dicinnamoyl 4-deoxy quinic acid and methyl ester derivatives and evaluation of the toxicity against the pea aphid Acyrthosiphon pisum, Org Biomol Chem, vol. 14 pp.2487-97 , doi: 10.1039/c5ob02483h.

Pandin C, Caroff M, Condemine G (2016), Antimicrobial Peptide Resistance Genes in the Plant Pathogen Dickeya dadantii, Appl Environ Microbiol, vol. 82 pp.6423-6430 , doi: 10.1128/AEM.01757-16.

Shih PM, Liang Y, Loque D (2016), Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops, Plant J, , doi: 10.1111/tpj.13176.

Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loque D (2016), A robust gene-stacking method utilizing yeast assembly for plant synthetic biology, Nat Commun, vol. 7 pp.13215 , doi: 10.1038/ncomms13215.

Albareda M, Rodrigue A, Brito B, Ruiz-Argueso T, Imperial J, Mandrand-Berthelot MA, Palacios J (2015), Rhizobium leguminosarum HupE is a highly-specific diffusion facilitator for nickel uptake, Metallomics, vol. 7 pp.691-701 , doi: 10.1039/C4MT00298A.

Gogada R, Singh SS, Lunavat SK, Pamarthi MM, Rodrigue A, Vadivelu B, Phanithi PB, Gopala V, Apte SK (2015), Engineered Deinococcus radiodurans R1 with NiCoT genes for bioremoval of trace cobalt from spent decontamination solutions of nuclear power reactors, Applied Microbiology and Biotechnology, vol. 99 pp.9203-9213 , doi: 10.1007/s00253-015-6761-4.

Golanowska M, Galardini M, Bazzicalupo M, Hugouvieux-Cotte-Pattat N, Mengoni A, Potrykus M, Slawiak M, Lojkowska E (2015), Draft Genome Sequence of a Highly Virulent Strain of the Plant Pathogen Dickeya solani, IFB0099, Genome Announcements, vol. 3 , doi: 10.1128/genomeA.00109-15.

Loth K, Costechareyre D, Effantin G, Rahbe Y, Condemine G, Landon C, da Silva P (2015), New Cyt-like ?-endotoxins from Dickeya dadantii: structure and aphicidal activity, Scientific Reports, vol. 5 pp.8791 , doi: 10.1038/srep08791.

Petit-Hartlein I, Rome K, de Rosny E, Molton F, Duboc C, Gueguen E, Rodrigue A, Coves J (2015), Biophysical and physiological characterization of ZraP from Escherichia coli, the periplasmic accessory protein of the atypical ZraSR two-component system, The Biochemical Journal, vol. 472 pp.205-216 , doi: 10.1042/BJ20150827.

Saint-Macary ME, Barbisan C, Gagey MJ, Frelin O, Beffa R, Lebrun MH, Droux M (2015), Methionine biosynthesis is essential for infection in the rice blast fungus Magnaporthe oryzae, PloS One, vol. 10 pp.e0111108 , doi: 10.1371/journal.pone.0111108.

Ansaldi M, Bazin I, Cholat P, Rodrigue A, Pignol D (2015), Toward inline multiplex biodetection of metals, bacteria, and toxins in water networks: the COMBITOX project, Environmental Science and Pollution Research, , doi: 10.1007/s11356-015-5582-4.

Cayron J, Prudent E, Escoffier C, Gueguen E, Mandrand-Berthelot MA, Pignol D, Garcia D, Rodrigue A (2015), Pushing the limits of nickel detection to nanomolar range using a set of engineered bioluminescent Escherichia coli, Environmental Science and Pollution Research, , doi: 10.1007/s11356-015-5580-6.

Bleriot C, Gault M, Gueguen E, Arnoux P, Pignol D, Mandrand-Berthelot MA, Rodrigue A (2014), Cu binding by the Escherichia coli metal-efflux accessory protein RcnB, Metallomics: Integrated Biometal Science, vol. 6 pp.1400-1409 , doi: 10.1039/c4mt00036f.

Duprey A, Chansavang V, Fremion F, Gonthier C, Louis Y, Lejeune P, Springer F, Desjardin V, Rodrigue A, Dorel C (2014), “NiCo Buster”: engineering E. coli for fast and efficient capture of cobalt and nickel, Journal of Biological Engineering, vol. 8 pp.19 , doi: 10.1186/1754-1611-8-19.

Gueguen E, Wills NM, Atkins JF, Cascales E (2014), Transcriptional Frameshifting Rescues Citrobacter rodentium Type VI Secretion by the Production of Two Length Variants from the Prematurely Interrupted tssM Gene, PLoS Genet, vol. 10 pp.e1004869 , doi: 10.1371/journal.pgen.1004869.

Hugouvieux-Cotte-Pattat N, Condemine G, Shevchik VE (2014), Bacterial pectate lyases, structural and functional diversity, Environmental Microbiology Reports, vol. 6 pp.427-440 , doi: 10.1111/1758-2229.12166.

Hutter CJ, Lehner R, Wirth C, Condemine G, Peneff C, Schirmer T (2014), Structure of the oligogalacturonate-specific KdgM porin, Acta Crystallographica. Section D, Biological Crystallography, vol. 70 pp.1770-1778 , doi: 10.1107/S1399004714007147.

Pineau C, Guschinskaya N, Robert X, Gouet P, Ballut L, Shevchik VE (2014), Substrate recognition by the bacterial type II secretion system: more than a simple interaction, Molecular Microbiology, vol. 94 pp.126-140 , doi: 10.1111/mmi.12744.

Potrykus M, Golanowska M?, Hugouvieux-Cotte-Pattat N, Lojkowska E (2014), Regulators Involved in Dickeya solani Virulence, Genetic Conservation, and Functional Variability, Molecular Plant-Microbe Interactions, vol. 27 pp.700-711 , doi: 10.1094/MPMI-09-13-0270-R.

Charaoui-Boukerzaza S, Hugouvieux-Cotte-Pattat N (2013), A family 3 glycosyl hydrolase of Dickeya dadantii 3937 is involved in the cleavage of aromatic glucosides, Microbiology, vol. 159 pp.2395-2404 , doi: 10.1099/mic.0.071407-0.

Costechareyre D, Chich JF, Strub JM, Rahbe Y, Condemine G (2013), Transcriptome of Dickeya dadantii Infecting Acyrthosiphon pisum Reveals a Strong Defense against Antimicrobial Peptides, PLoS ONE, vol. 8 , doi: 10.1371/journal.pone.0054118.

Gueguen E, Durand E, Zhang XY, d'Amalric Q, Journet L, Cascales E (2013), Expression of a Yersinia pseudotuberculosis Type VI Secretion System Is Responsive to Envelope Stresses through the OmpR Transcriptional Activator, PLoS ONE, vol. 8 , doi: 10.1371/journal.pone.0066615.

Gueguen E, Cascales E (2013), Promoter Swapping Unveils the Role of the Citrobacter rodentium CTS1 Type VI Secretion System in Interbacterial Competition, Applied and Environmental Microbiology, vol. 79 pp.32-38 , doi: 10.1128/AEM.02504-12.

Hassan S, Shevchik VE, Robert X, Hugouvieux-Cotte-Pattat N (2013), PelN Is a New Pectate Lyase of Dickeya dadantii with Unusual Characteristics, Journal of Bacteriology, vol. 195 pp.2197-2206 , doi: 10.1128/JB.02118-12.

Lallemand M, Login FH, Guschinskaya N, Pineau C, Effantin G, Robert X, Shevchik VE (2013), Dynamic Interplay between the Periplasmic and Transmembrane Domains of GspL and GspM in the Type II Secretion System, PLoS ONE, vol. 8 , doi: 10.1371/journal.pone.0079562.

Ray P, Girard V, Gault M, Job C, Bonneu M, Mandrand-Berthelot MA, Singh SS, Job D, Rodrigue A (2012), Pseudomonas putida KT2440 response to nickel or cobalt induced stress by quantitative proteomics, Metallomics, vol. 5 pp.68-79 , doi: 10.1039/C2MT20147J.

Rehman S, Gu S, Shevchik VE, Pickersgill RW (2013), Anatomy of secretin binding to the Dickeya dadantii type II secretion system pilotin, Acta Crystallographica Section D Biological Crystallography, vol. 69 pp.1381-1386 , doi: 10.1107/S0907444913007658.

Rondelet A, Condemine G (2013), Type II secretion: the substrates that won’t go away, Research in Microbiology, vol. 164 pp.556-561 , doi: 10.1016/j.resmic.2013.03.005.

Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Solanilla EL, Low D, Moleleki L, Pirhonen M, Pitman A, Perna N, Reverchon S, Rodríguez Palenzuela P, San Francisco M, Toth I, Tsuyumu S, van der Waals J, van der Wolf J, Van Gijsegem F, Yang CH, Yedidia I (2012), The Role of Secretion Systems and Small Molecules in Soft-Rot Enterobacteriaceae Pathogenicity, Annual Review of Phytopathology, vol. 50 pp.425-449 , doi: 10.1146/annurev-phyto-081211-173013.

Costechareyre D, Balmand S, Condemine G, Rahbe Y (2012), Dickeya dadantii, a Plant Pathogenic Bacterium Producing Cyt-Like Entomotoxins, Causes Septicemia in the Pea Aphid Acyrthosiphon pisum, PLoS ONE, vol. 7 , doi: 10.1371/journal.pone.0030702.

Gu S, Kelly G, Wang X, Frenkiel T, Shevchik VE, Pickersgill RW (2012), Solution Structure of Homology Region (HR) Domain of Type II Secretion System, Journal of Biological Chemistry, vol. 287 pp.9072-9080 , doi: 10.1074/jbc.M111.300624.

Gu S, Rehman S, Wang X, Shevchik VE, Pickersgill RW (2012), Structural and Functional Insights into the Pilotin-Secretin Complex of the Type II Secretion System, PLoS Pathog, vol. 8 , doi: 10.1371/journal.ppat.1002531.

Hassan S, Shevchik VE, Robert X, Hugouvieux-Cotte-Pattat N (2013), PelN Is a New Pectate Lyase of Dickeya dadantii with Unusual Characteristics, Journal of Bacteriology, vol. 195 pp.2197-2206 , doi: 10.1128/JB.02118-12.

Rondelet A, Condemine G (2012), SurA Is Involved in the Targeting to the Outer Membrane of a Tat Signal Sequence-Anchored Protein, Journal of Bacteriology, vol. 194 pp.6131-6142 , doi: 10.1128/JB.01419-12.

Wang X, Pineau C, Gu S, Guschinskaya N, Pickersgill RW, Shevchik VE (2012), Cysteine Scanning Mutagenesis and Disulfide Mapping Analysis of Arrangement of GspC and GspD Protomers within the Type 2 Secretion System, Journal of Biological Chemistry, vol. 287 pp.19082-19093 , doi: 10.1074/jbc.M112.346338.